Re: [Freesurfer] mirror labels across hemispheres

2015-06-10 Thread Douglas Greve
You can use mri_label2label to create a binary mask of the label (--outmask), then use mris_apply_reg, something like mris_apply_reg --src lh.label.bin.mgh --trg lh.label.bin.on-rh.mgh --streg lh.sphere.reg.fsaverage_sym rh.sphere.reg.fsaverage_sym --no-rev Then use mri_cor2label to convert i

[Freesurfer] mirror labels across hemispheres

2015-06-09 Thread Ecker, Christine
Hi, I am trying to map a label in the left hemisphere to the right hemisphere. To do so, I have registered the subject's native surfaces to the fsaverage_sym template using surfreg -s $subj -t fsaverage_sym -lh surfreg -s $subj -t fsaverage_sym -lh -xhemi What would be the best way to map the