Re: [Freesurfer] mincinfo broken pipe

2007-10-12 Thread Chuck Theobald
I believe we are using the CentOS version. I am downloading the RH9 distro for version 3.0.3 to see if that will work for us. Chuck Nick Schmansky wrote: Chuck, Which freesurfer is installed? The rh9 freesurfer dist is built against libstdc++.so.5 (which many systems dont have), whereas the

Re: [Freesurfer] mincinfo broken pipe

2007-10-12 Thread Nick Schmansky
Chuck, Which freesurfer is installed? The rh9 freesurfer dist is built against libstdc++.so.5 (which many systems dont have), whereas the centos freesurfer dist uses .6. Nick On Fri, 2007-10-12 at 14:13 -0700, Chuck Theobald wrote: > Hi, > > No, we have sufficient disk space on each machine. >

Re: [Freesurfer] mincinfo broken pipe

2007-10-12 Thread Bruce Fischl
you might check the MNI list to see if this is a known issue for them. On Fri, 12 Oct 2007, Chuck Theobald wrote: Hi, No, we have sufficient disk space on each machine. This used to work, but started failing following upgrades to system files. I suspect libc.so.6 or libm.so.6, since mincin

Re: [Freesurfer] mincinfo broken pipe

2007-10-12 Thread Chuck Theobald
Hi, No, we have sufficient disk space on each machine. This used to work, but started failing following upgrades to system files. I suspect libc.so.6 or libm.so.6, since mincinfo is linked to both, and both were part of the upgrade, but I don't have anything specific pointing to this as the c

Re: [Freesurfer] mincinfo broken pipe

2007-10-12 Thread Bruce Fischl
Hi Chuck, is that partition full? Bruce On Fri, 12 Oct 2007, Chuck Theobald wrote: Hi, Following some system upgrade to our Linux 2.6 systems, freesurfer has ceased to work. When running recon-all on bert, we get a message referring to a broken pipe and a crash in mincinfo. We are running G

[Freesurfer] mincinfo broken pipe

2007-10-12 Thread Chuck Theobald
Hi, Following some system upgrade to our Linux 2.6 systems, freesurfer has ceased to work. When running recon-all on bert, we get a message referring to a broken pipe and a crash in mincinfo. We are running Gentoo: doolin ~ # uname -a Linux doolin 2.6.21-gentoo-r4 #1 SMP Thu Aug 9 09:33:11 PD