, February 22, 2021 at 5:42 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] mincRead error
External Email - Use Caution
Hi all,
I was wondering if anyone had a chance to look at the log to shed some light on
this mystery error, or if more info or a different log are needed.
Thank
e.
>>
>> Andrew
>>
>>
>>
>> *From: *freesurfer-boun...@nmr.mgh.harvard.edu <
>> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Michele Valotti <
>> michele.valo...@gmail.com>
>> *Date: *Thursday, February 11, 2021 at 12:07 PM
>
To: *Freesurfer support list
> *Subject: *Re: [Freesurfer] mincRead error
>
> *External Email - Use Caution*
>
> Hi Andrew,
>
> I do think the problem is in the MINC but the minc paths point to the
> freesurfer installation, so I think it should be running using tha
If you send the mri_nu_correct.mni.log we can figure it out for sure.
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Michele Valotti
Date: Thursday, February 11, 2021 at 12:07 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] mincRead error
External Email
t;
>
>
> *From: *freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Michele Valotti <
> michele.valo...@gmail.com>
> *Date: *Thursday, February 11, 2021 at 11:02 AM
> *To: *Freesurfer support list
> *Subject: *Re: [Frees
lt;
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Michele Valotti <
> michele.valo...@gmail.com>
> *Date: *Monday, February 8, 2021 at 9:53 AM
> *To: *Freesurfer support list
> *Subject: *Re: [Freesurfer] mincRead error
>
> *External Email - Use Caution*
&
: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Michele Valotti
Date: Thursday, February 11, 2021 at 11:02 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] mincRead error
External Email - Use Caution
Hi Trisanna,
thank you for your reply, I am using minc2 (version 1.9.16) but
r Centre
>
> --
>
>
>
>
>
> *From: * on behalf of "Hoopes,
> Andrew"
> *Reply-To: *Freesurfer support list
> *Date: *Wednesday, February 10, 2021 at 9:54 AM
> *To: *Freesurfer support list
> *Subject: *Re: [Freesurfer] mincRead error
>
>
>
>
.
Best,
Trisanna Sprung-Much
Research Associate
McGill University
MD Anderson Cancer Centre
--
From: on behalf of "Hoopes, Andrew"
Reply-To: Freesurfer support list
Date: Wednesday, February 10, 2021 at 9:54 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] mincRead error
Ca
with the
freesurfer one.
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Michele Valotti
Date: Monday, February 8, 2021 at 9:53 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] mincRead error
External Email - Use Caution
attached is the log for the run, the
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attached is the log for the run, the version of mri_convert is the same
version on my local machine (where the command runs) and in the cloud
instance
On Fri, 5 Feb 2021 at 18:02, Michele Valotti
wrote:
> Hi all,
> I am running long FreeSurfer and af
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Hi all,
I am running long FreeSurfer and after successfully testing it on my local
machine I tried to run it on a server (which should however have the same
FreeSurfer version and setup), but I am getting this error
mri_convert ./tmp.mri_nu_correct.mni
previous nu_correct error you were getting?
best,
Andrew
From: on behalf of Michele Valotti
Reply-To: FS Help
Date: Monday, January 4, 2021 at 10:49 AM
To: FS Help
Subject: [Freesurfer] mincRead error in recon-all
External Email - Use Caution
Dear Freesurfer Team,
I am trying to run reco
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Dear Freesurfer Team,
I am trying to run recon-all on a test scan, but I am getting this error:
Error opening ./tmp.mri_nu_correct.mni.6973/nu1.mnc
mincRead(): error reading volume from file
./tmp.mri_nu_correct.mni.6973/nu1.mnc
(logs attached)
I jus
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