Re: [Freesurfer] mgz conversion

2005-08-18 Thread Doug Greve
don't know about the library stuff, but your command-line is incorrect as you have specified a directory as the output. COR is the only format that requires a directory as the output. everything else requires a filename (eg, f.mgz). David Soscia wrote: hey guys, When I go to do a conver

Re: [Freesurfer] mgz conversion

2005-08-18 Thread Rudolph Pienaar
I should have mentioned as a double check that you can type the following: rpm -qa | grep gsl to see if any 'rpm' (the package management system) files installed on your system match the gsl. Probably you won't find anything. The easiest way to install software for a RedHat system is to

Re: [Freesurfer] mgz conversion

2005-08-18 Thread Rudolph Pienaar
On Thursday 18 August 2005 09:18, David Soscia wrote: > mri_convert -ot mgz Image0001.dcm . > mri_convert: error while loading shared libraries: libgsl.so.0: cannot > open shared object file: No such file or directory Yes - it sounds as though you are missing the gsl (GNU Scientific Library) pack

[Freesurfer] mgz conversion

2005-08-18 Thread David Soscia
hey guys, When I go to do a conversion from dicom to mgz, im getting the error: mri_convert -ot mgz Image0001.dcm . mri_convert: error while loading shared libraries: libgsl.so.0: cannot open shared object file: No such file or directory I did an ls command for this file and found no matches in

Re: [Freesurfer] mgz conversion

2005-08-15 Thread Doug Greve
need a command-line and what it prints out David Soscia wrote: Hey Guys, I have been converting dicom files to COR for the past month and all has been working fine. Now I am trying to convert dicom files to mgz format and I am getting an error every time. I type in the same thing I did for

Re: [Freesurfer] mgz conversion

2005-08-15 Thread Bruce Fischl
Hi David, sounds like your version is old enough that it doesn't know about .mgz format. cheers, Bruce On Mon, 15 Aug 2005, David Soscia wrote: Hey Guys, I have been converting dicom files to COR for the past month and all has been working fine. Now I am trying to convert dicom files to

[Freesurfer] mgz conversion

2005-08-15 Thread David Soscia
Hey Guys, I have been converting dicom files to COR for the past month and all has been working fine. Now I am trying to convert dicom files to mgz format and I am getting an error every time. I type in the same thing I did for the COR conversion, except I replace "-ot cor" with "-ot mgz." The