Re: [Freesurfer] medial wall crossing the surface: repost

2013-10-21 Thread silve...@gmx.com
nks again, Paul > - Original Message - > From: Bruce Fischl > Sent: 10/22/13 09:46 AM > To: silve...@gmx.com > Subject: Re: [Freesurfer] medial wall crossing the surface: repost > > Try fixing the aseg and rerunning > Cheers > Bruce > > > On

Re: [Freesurfer] medial wall crossing the surface: repost

2013-10-21 Thread Bruce Fischl
2 PM >> To: silve...@gmx.com >> Subject: Re: [Freesurfer] medial wall crossing the surface >> >> Does the aseg cross as well? >> >> >> >>> On Oct 17, 2013, at 10:07 PM, "silve...@gmx.com" wrote: >>> >>> Dear All, >&g

Re: [Freesurfer] medial wall crossing the surface: repost

2013-10-21 Thread silve...@gmx.com
Not always, but yes, in some instances the aseg crosses. > - Original Message - > From: Bruce Fischl > Sent: 10/18/13 01:22 PM > To: silve...@gmx.com > Subject: Re: [Freesurfer] medial wall crossing the surface > > Does the aseg cross as well? > > >

Re: [Freesurfer] medial wall crossing the surface

2013-10-18 Thread silve...@gmx.com
Not always, but yes, in some instances the aseg crosses. > - Original Message - > From: Bruce Fischl > Sent: 10/18/13 01:22 PM > To: silve...@gmx.com > Subject: Re: [Freesurfer] medial wall crossing the surface > > Does the aseg cross as well? > > >

Re: [Freesurfer] medial wall crossing the surface

2013-10-17 Thread Bruce Fischl
Does the aseg cross as well? On Oct 17, 2013, at 10:07 PM, "silve...@gmx.com" wrote: > Dear All, > > I too am seeing the medial pial surfaces crossing hemispheres in some > subjects. > > The approach that appears to be working for me involves making copies of > brainmask.mgz and aseg.mgz

[Freesurfer] medial wall crossing the surface

2013-10-17 Thread silve...@gmx.com
Dear All, I too am seeing the medial pial surfaces crossing hemispheres in some subjects. The approach that appears to be working for me involves making copies of brainmask.mgz and aseg.mgz For the left hemisphere crossing into the right, edit brainmask.mgz and aseg.mgz to delete voxels at the