Re: [Freesurfer] mapping a surface from fsaverage_sym to the subject's native surface

2016-07-07 Thread Douglas N Greve
I answered this yesterday On 07/06/2016 01:47 PM, Douglas N Greve wrote: > > It would be something like > mris_apply_reg --src lh.data-from-fsavgsym.mgh --streg > $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg > $SUBJECTS_DIR/yoursubject/surf/lh.fsaverage_sym.sphere.reg --o > lh.data-from-fsav

[Freesurfer] mapping a surface from fsaverage_sym to the subject's native surface

2016-07-07 Thread ali reza mohammadi nejad
Dear Freesurfer experts, > > Based on the FS wiki, I calculated the cortical thickness difference between > the lh and rh of a subject. > Now, I want to use the “mris_apply_reg” command to map the “left-right > difference” from fsaverage_sym back to the subject's native surface. > Unfortunately

Re: [Freesurfer] mapping a surface from fsaverage_sym to the subject's native surface

2016-07-06 Thread Douglas N Greve
It would be something like mris_apply_reg --src lh.data-from-fsavgsym.mgh --streg $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg $SUBJECTS_DIR/yoursubject/surf/lh.fsaverage_sym.sphere.reg --o lh.data-from-fsavgsym-on-yoursubject.mgh On 07/04/2016 10:34 AM, Ali-Reza Mohammadi-Nejad wrote: > De

[Freesurfer] mapping a surface from fsaverage_sym to the subject's native surface

2016-07-04 Thread Ali-Reza Mohammadi-Nejad
Dear Freesurfer experts, Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject.Now, I want to use the “mris_apply_reg” command to map the “left-right  difference” from fsaverage_sym back to the subject's native surface.Unfortunately, I did not fi

[Freesurfer] mapping a surface from fsaverage_sym to the subject's native surface

2016-07-03 Thread Ali-Reza Mohammadi-Nejad
Dear Freesurfer experts, Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject. Now, I want to use the “mris_apply_reg” command to map the “left-right   difference” from fsaverage_sym back to the subject's native surface. Unfortunately, I did n