Re: [Freesurfer] manual edits boundary 2 screenshots example for 3T adult

2013-12-04 Thread Kaiming Yin
Thanks, the resolution is: 1*1*1 (see below): data_type INT16 dim1 160 dim2 240 dim3 256 dim4 1 datatype 4 pixdim11.00 pixdim21.00 pixdim31.00 pixdim42.299523 cal_max0. cal_min

Re: [Freesurfer] manual edits boundary 2 screenshots example for 3T adult

2013-12-04 Thread Bruce Fischl
yes, the first one looks like an issue, psossibley a topological defect fixed in the wrong way. What is the resolution of this data? The second one looks like the surface dips into the cerebellum. What is the aseg like? The 3rd one looks ok, but I'm not positive that I understand what you are p

Re: [Freesurfer] manual edits boundary 2 screenshots example for 3T adult

2013-12-04 Thread Bruce Fischl
Hi Kaiming those look pretty good. It's impossible to tell for sure from a single slice. Bruce On Wed, 4 Dec 2013, Kaiming Yin wrote: Dear guys, I have a simple question in the manual edits parts. I am using freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 with Ubuntu 13.10, for a  tri