Hi Doug,
just a quick follow-up on my previous questions regarding custom average
surfaces.
I guess I am a bit confused regarding the relationship of custom templates
and custom average surfaces.
I made a custom template and a custom average surface. However, I don't
understand how they are related
You can just copy in the T1.mgz from fsaverage (won't matter that it is
human), or you can try running make_average_volume to make a NHP
volume. Not sure that will work, but make sure to use --no-aseg
doug
On 8/19/13 8:43 PM, Caspar M. Schwiedrzik wrote:
Hi Doug,
I ran make_average_surfac
Hi Doug,
I ran make_average_surface.no-aparc and identity matrices on my data, and I
seems to have completed the averaging without an error. However, when I try
to view the result with tksurfer, I get an error because there is no
average T1 for the average subject. How would you recommend I go abou
I would probably just try to do it by hand. Copy a file with the
identity matrix into the right folder, then run
tkregister2 --fstal --s subject
It will bring the human atlas up. I would then play with it a little bit
to get it to look ok. For surface-based applications, it will have no
effec
Hi Doug,
that's great, thank you very much.
>From the previous posts I assume that this does not solve the issue with
the missing Talairach.xfm. Do you have a recommendation for that?
Thanks, Caspar
2013/8/19 Douglas N Greve
>
> I've put that script here
>
>
> ftp://surfer.nmr.mgh.harvard.edu/t
I've put that script here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_surface.no-aparc
On 08/19/2013 02:53 PM, Caspar M. Schwiedrzik wrote:
> Hi Freesurfer experts,
> I am trying to make an average surface from several monkey surfaces,
> and I ran into a problem
Hi Freesurfer experts,
I am trying to make an average surface from several monkey surfaces, and I
ran into a problem with make_average_subject. Specifically, I do not have
an aparc file nor a talairach.xfm. It seems that these problems have come
up on the list before (
http://www.mail-archive.com/f
