mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Monday, January 30, 2017 at 10:48 AM
To: Freesurfer support list
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks again for the help! And congrats on tracula — it's a great tool, and
vard.edu>>
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks again for the help! And congrats on tracula — it's a great tool, and the
online support is really good :)
I do have a follow-up question, if that’s OK. I’m currently running bedpost,
and it gives
se>]
Sent: Thursday, January 26, 2017 3:29 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks so much for your help! Sorry for the delay in replying -- just wanted to
make sure the was problem was indeed solved. Since I'm using a ser
Sent: Thursday, January 26, 2017 3:29 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks so much for your help! Sorry for the delay in replying -- just wanted to
make sure the was problem was indeed solved. Since I'm using a server for which
o: Freesurfer support list
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Barbara - If you're using the 5.3 version, then you'll have to download the
update from 2014:
https://surfer.nmr.mgh.harvard.edu/fswiki/Tracula#Updates
This should fix the problem. But if there's a vers
2017 7:00 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] longitudinal tracula error
Hi Anastasia,
Thanks so much for your quick reply. I've only tried version 6.0 to determine
whether the error was possibly version-related, but that doesn’t seem to be the
case… I'm actually wo
edu<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] longitudinal tracula error
Dear FreeSurfer experts,
I’m running tracula on longitudinal data but I’ve encountered the following
error at the “trac-all -prep” stage: ERROR: flag ; unrecognized (see below)
trac-preproc -c /Doc
nt: Friday, January 20, 2017 9:01 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] longitudinal tracula error
Dear FreeSurfer experts,
I’m running tracula on longitudinal data but I’ve encountered the following
error at the “trac-all -prep” stage: ERROR: flag ; unrecognized (see belo
Dear FreeSurfer experts,
I’m running tracula on longitudinal data but I’ve encountered the following
error at the “trac-all -prep” stage: ERROR: flag ; unrecognized (see below)
trac-preproc -c /Documents/TRACULA/TEST/S0001.01_T1/scripts/dmrirc.local -log
/Documents/TRACULA/TEST/S0001.01_T1/scr
Hi Emad - I believe that it's not finding your freesurfer recons. They
should be under the $SUBJECTS_DIR and have the same names for time points
and longitudinal template as what is under your tracula output directory
(if the latter is different from SUBJECTS_DIR).
Best,
a.y
On Fri, 1 Apr 2
Hi Emad - The error happens at the very beginning, so I'm wondering if
something went wrong in the previous steps, before -path. Can you please
send me the entire trac-all.log of one of your subjects? Thank you!
a.y
On Wed, 30 Mar 2016, Emad Ahmadi wrote:
Hi Anastasia,
I hope you’re enjoy
Hi Anastasia,
I hope you’re enjoying your evening!
I’m doing longitudinal TRACULA analysis on two subjects, each having two time
points. I have already taken the steps of longitudinal recon-all and trac-all
-prep & -bedp.
Now I’m trying to do trac-all -path, but it gives me an error that I can
Hi Francesco - Please attach your dmrirc, and also the tracula log file of
your subject (scripts/trac-all.log). It's hard to guess what went wrong
without looking at the complete output.
Thanks,
a.y
On Thu, 29 Jan 2015, Francesco Siciliano wrote:
Hi,
I have been unsuccessful in getting lon
Hi,
I have been unsuccessful in getting longitudinal tracula to run. I have been
directing my dmrirc file to skip the registration-based B0-inhomogeneity
compensation (by setting it to 0). However, when I try to run trac-all prep, I
get an error message asking to specify a field map for each in
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