Re: [Freesurfer] longitudinal data processing

2014-11-04 Thread Martin Reuter
Hi Robby, depends on what you are trying to achieve. The first stats model we implemented was the 2-stage model (with a linear fit inside each subject and then a cross sectional comparison of the atrophy rates, ie. slopes of the fit). For the first step the surface data (within-subject) is al

[Freesurfer] longitudinal data processing

2014-11-04 Thread Robby De Pauw
Dear FS-experts Is there any command that I can use for caching my preprocessed data in the recon-all longitudinal stream, since this is possible through adding the -qcache option in the cross-sectional pipeline. Or maybe this is already automatically done without adding any option to the comma