Hi Alex,
Thanks for your answer! Now it works!
Regards
Kathy
On Sat, May 5, 2012 at 10:13 PM, Alexandre Gramfort <
alexandre.gramf...@inria.fr> wrote:
> hi,
>
> this problem has been reported and fixed.
>
> You should install the latest hot fit with:
>
> https://github.com/nipy/PySurfer/zipba
hi,
this problem has been reported and fixed.
You should install the latest hot fit with:
https://github.com/nipy/PySurfer/zipball/master
then do from the folder:
python setup.py install
HTH
Alex
On Sat, May 5, 2012 at 10:09 PM, keepmoon wrote:
> Hi Michael and Alex,
>
> Thanks for your su
Hi Michael and Alex,
Thanks for your suggestion about my question!
I am trying to install *Pysurfer* to solve my problem (load multiple
overlays with different colors). I have already installed all the software
following the instruction (three software (1) *epd-7.2-2-macosx-i386.dmg*;
(2) *se
Hi Alex,
Thanks for your suggestion! I download Python 2.7 and install it. In my
computer: ~/Library/Python, here are 3 version Python (2.3, 2.5, 2.6 ).
there is no 2.7 ~/Library/Python. It reminds me create a directory in
/Users/Kathy/library/Python/2.7. When I use easy_install -U Pysurfer,
Hi Kathy,
subprocess.check_output
was introduced in python 2.7. You use 2.6
I recommend to upgrade if possible.
Otherwise we need to fix this
Alex
On Fri, May 4, 2012 at 3:44 PM, keepmoon wrote:
> Dear Michael,
>
> I try to install Python and Pysurfer following the instructions
> (using easy
Dear Michael,
I try to install Python and Pysurfer following the instructions (using
*easy_install
-U pysurfer *and additional packages using*EPD*). It didn't show error
during the install process. Now I want to test it.
In Terminal I typed:
Pysurfer fsaverage lh infalted
then it shows follo
Dear Michael,
Thank you for your answer! I will try it! but I have no knowledge about
Python. I have some Matlab code. Maybe I first wait Doug's answer. If his
answer is a little easier to understand for me, I will share here.
Thanks
Regards
Kathy
On Wed, May 2, 2012 at 6:32 PM, Michael Wa
Dear Doug,
Thank you for your reply soon. I would like to know further instructions
for doing this.
Thanks
Best wishes
Kathy
On Wed, May 2, 2012 at 5:59 PM, Douglas N Greve
wrote:
> Hi Kathy, there is not an easy way to do this. The closest thing you
> could do would be to create an annot
Hi,
If you're somewhat handy with Python, you can use PySurfer for this.
See this example:
http://pysurfer.github.com/auto_examples/plot_fmri_conjunction.html
Best,
Michael
On Wed, May 2, 2012 at 7:51 AM, keepmoon wrote:
> Dear all,
>
> I search my question before I post it. I did find similar
Hi Kathy, there is not an easy way to do this. The closest thing you
could do would be to create an annotation with those 3 colors based on
the thresholded sig maps. Let me know if you want instructions to do this.
doug
On 05/02/2012 10:51 AM, keepmoon wrote:
> Dear all,
>
> I search my question
Dear all,
I search my question before I post it. I did find similar questions, but
didn't find answer. I want to overlay two files with different colors. For
example, one is sig1.mgh from cortical thickness, the other is sig2.mgh
from area. I want to use tksurfer overlaying them with three colors:
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