Re: [Freesurfer] lgi vertex coordinate problem

2017-05-23 Thread Serian doma
No, I am working with MATLAB on the outputs of freesurfer and the freesurfer_surf2voxels command is under MATLAB. I want to check the coordinates of lgi values found by recon - all lgi command on MATLAB. When I check the coordinates on the brain image I realize a shift app 5-10 vox according to re

Re: [Freesurfer] lgi vertex coordinate problem

2017-05-22 Thread Douglas N Greve
I don't think that freesurfer_surf2voxles is our command is it? In any event, I don't know what you mean about shifts. On 05/19/2017 09:01 AM, Serian doma wrote: > Hi there, > > I am trying to use local gyrification index values for the purpose of > adaptive smoothing. I use recon -all and calc

[Freesurfer] lgi vertex coordinate problem

2017-05-19 Thread Serian doma
Hi there, I am trying to use local gyrification index values for the purpose of adaptive smoothing. I use recon -all and calculate lgi values for vertices on the surface. To show related voxels on the MR volume I changed vertex coordinates to voxel coordinates with the help of freesurfer_surf2voxe