You can get brain.mgz by converting the COR files in
/space/ventzl/1/users/SUBJECTS_DIR/mano001/mri/brain to mgz using
mri_convert --in_type cor --out_type mgz
Robert Levy wrote:
Hi Doug,
I just got around to looking at this problem again and trying what you
had suggested (link brain.mgz to
Hi Doug,
I just got around to looking at this problem again and trying what you
had suggested (link brain.mgz to brainmask.mgz), and the problem is,
there is no brain.mgz either. I would expect to see it in
$SUBJECTS_DIR/$subject/mri/brain.mgz, but instead what I see, both in
individual subj
Try coping or linking the brain.mgz to brainmask.mgz
Robert Levy wrote:
Hi,
Yes, I set the rate to various values to test it, and all resulted in
the same threshold. I didn't mask to brain, because that causes an
error message (it cites the lack of a brainmap.mgz as the reason, so
that
Hi,
Yes, I set the rate to various values to test it, and all resulted in
the same threshold. I didn't mask to brain, because that causes an
error message (it cites the lack of a brainmap.mgz as the reason, so
that at least I know is due to it being processed in an older stream).
So I wonde
what do you mean by "staring p value"? Do you mean the FDR itself?
Robert Levy wrote:
Hi,
Is it possible to use FDR in stable3 for data that was processed prior
to the introduction of brainmask.mgz? It seems like I can view the
data just fine in stable3, or stable2 for that matter (though
Hi,
Is it possible to use FDR in stable3 for data that was processed prior
to the introduction of brainmask.mgz? It seems like I can view the
data just fine in stable3, or stable2 for that matter (though not stable
4), but FDR gives results that seem wrong. FDR sets the threshold to
-log10
