Hi Chindhuri
remove the "-l nodes=1:opteron" from your command line. Also, you
probably want to send emails like this to h...@nmr.mgh.harvard.edu in the
future, as they are Martinos-specific.
cheers
Bruce
On Wed, 22 Jun 2011, Chindhuri
Selvadurai wrote:
>
>
> I thought the default was p10, so
I thought the default was p10, so I just used that to try again, however
I'm still getting that error with no extra info in the log. what is the
name of the queue, maybe that is my problem:
command:
pbsubmit -q p10 -l nodes=1:opteron -m chinsel -c 'recon-all -s RMAUT021
-all -i
/cluster/archive
What exact website page are you using for help on launchpad? launchpad has no
opteron nodes so you should not be specifying that resource. Its queue names
are also different than seychelles. There is no sergeant queue.
Read:
https://www.nmr.mgh.harvard.edu/martinos/itgroup/launchpad.html
Hello,
I am trying to do recon-all using launchpad, and I am not sure how to fix
the error I am getting. I checked IT's launchpad help website, but can't
seem to figure it out.
Using fs v4
subjects_dir: /space/ventzl/36/users/RespMon12C/subjects
command: pbsubmit -q sergeant -l nodes=1:opteron -
