Re: [Freesurfer] last index missing when using mri_label2vol

2012-02-27 Thread Douglas N Greve
yes, this is a know issue. It has been fixed for the next version, but you can upload a fixed linux program from ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_label2vol copy this to $FREESURFER_HOME/bin doug David Grayson wrote: > Hi, > > I am noticing that when I use ‘mri_lab

[Freesurfer] last index missing when using mri_label2vol

2012-02-24 Thread David Grayson
Hi, I am noticing that when I use ‘mri_label2vol --annot’ it is not creating the final label from the color table file. I tried using the --thresh 1 option, but that didn't work either. i.e... mri_label2vol --annot lh.custom.annot --temp ../mri/orig.mgz --o custom_lh.nii.gz --subject FREESURF