Re: [Freesurfer] kvlQuantify naming problem [possible fix]

2014-05-21 Thread Eugenio Iglesias
Frost" To: freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, May 21, 2014 9:58:32 PM Subject: Re: [Freesurfer] kvlQuantify naming problem [possible fix] Follow-up: I then run into indexing problems when calling freeview with subfield volumes (similar to http://bit.ly/1pdEWRZ ), which lead

Re: [Freesurfer] kvlQuantify naming problem [possible fix]

2014-05-21 Thread C.P. Frost
Follow-up: I then run into indexing problems when calling freeview with subfield volumes (similar to http://bit.ly/1pdEWRZ), which leads me to believe kvlQuantify is the only script that relies on the old convention. Changing the names back to CA2_3.mgz, etc., fixes THAT problem. Rather than chang

[Freesurfer] kvlQuantify naming problem [possible fix]

2014-05-21 Thread C.P. Frost
Hello all, My site has recently upgraded to the newest version of Freesurfer, and I've run a set of subjects on recon-all using the hippocampal subfield segmentation flag. Everything went well. Then in running kvlQuantifyHippocampalSubfieldSegmentations.sh, I received error messages indicating tha