Re: [Freesurfer] issue running trac-all longitudinal

2019-04-19 Thread Daniel Callow
External Email - Use Caution Sorry, that fix did not infact fix the problem. I am still getting the following error. writing to /Volumes/DANIEL/dti_freesurf/trac/Ex.AES101.long.base_AES101/dmri/dwi_orig.nii.gz... Saving bvals and bvecs mv -f /Volumes/DANIEL/dti_freesurf/trac/Ex.

Re: [Freesurfer] issue running trac-all longitudinal

2019-04-19 Thread Daniel Callow
External Email - Use Caution Disabling root system integrity protection seems to have solved the problem. *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2...@gmail.com * 443-254-6298 On Thu

Re: [Freesurfer] issue running trac-all longitudinal

2019-04-18 Thread Daniel Callow
External Email - Use Caution Sorry, the beginning of the email seems to have been cut off. I was trying to run trac-all on one of my subjects to troubleshoot running the following command. trac-all -prep -c /Volumes/DANIEL/dmrirc.long.example.single.sh I posted the errors and at

[Freesurfer] issue running trac-all longitudinal

2019-04-18 Thread Daniel Callow
External Email - Use Caution Hello, trac-all -prep -c /Volumes/DANIEL/dmrirc.long.example.single.sh with the attached configuration file. I get the following error message INFO: no Siemens slice order reversal detected (good!). TR=6300.00, TE=106.00, TI=-1.00, flip angle=90.