Re: [Freesurfer] interchanging between FSL freesurfer

2013-03-18 Thread Bruce Fischl
Hi Martina we analyze the data in native coordinates not MNI/talairach ones. You can convert volumes to tal coords using either mri_vol2vol or mri_convert and the talairach transform found in $SUBJECTS_DIR/$subject/mri/transforms/talairach.xfm cheers Bruce On Mon, 18 Mar 2013, martina.andell

[Freesurfer] interchanging between FSL freesurfer

2013-03-18 Thread martina.andellini
Hi, my name is Martina and I'm a student of biomedical engineering in Rome. I'm doin g a brain imaging research for my final exam. I'm using freesurfer for registration and segmentation of brain images instead o f FSL tools (flirt,bet and fast) and then continue to process the data with FSL. But