actually I had forgotten that we described the basic surface deformation
to avoid dura in Andre's paper, which is what I first wrote it for:
2008 Brain morphometry with multiecho MPRAGE. van der
Kouwe, Andre J W; Benner, Thomas; Salat, David H and Fischl, Bruce
NeuroImage, 2008.
On Tue, 3
Hi Matt
I don't think that counts as a methods paper for the T2-based
deformation. There is no validation or comparison with other methods in
it, and really not enough detail to replicate what we did.
cheers
Bruce
On Tue, 30 Aug
2016, Matt Glasser wrote:
Sure there¹s a publication. See F
Sure there¹s a publication. See Figure 14:
http://www.sciencedirect.com/science/article/pii/S1053811913005053
Peace,
Matt.
On 8/30/16, 10:21 AM, "Bruce Fischl"
wrote:
>Hi Don
>
>the T2 or FLAIR helps us avoid dura. It is still a beta version though as
>we don't have a ton of experience with
Hi Don
the T2 or FLAIR helps us avoid dura. It is still a beta version though as
we don't have a ton of experience with it, and no, there is no reference
for it yet (or maybe ever) :)
Bruce
On Tue, 30 Aug 2016, Krieger, Donald N. wrote:
Dear list:
What are the advantages of including
x27;Freesurfer support list' <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, August 30, 2016 at 9:25 AM
To: 'Freesurfer support list' <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] inclusion of both T1 and T2 in a recon-all run
Thank you – very h
Thank you - very helpful.
Best - Don
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: Tuesday, August 30, 2016 10:23 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] inclusion of both T1 and T2 in a
ps. The 5.3 version is pretty buggy, so I'd wait until 6.0 to test it out
On 8/30/16 10:12 AM, Krieger, Donald N. wrote:
Dear list:
What are the advantages of including a T2 scan when running recon-all
–all ?
Which results can it effect and to what extent?
And how sensitive is freesurfer
Hi Don,
the T2 stream is a work-in-progress, so we don't have a lot of these
answers. In theory, a T2 will allow better placement of the pial surface
allowing it to better exclude dura. No publication on this yet.
doug
On 8/30/16 10:12 AM, Krieger, Donald N. wrote:
Dear list:
What are t
Dear list:
What are the advantages of including a T2 scan when running recon-all -all ?
Which results can it effect and to what extent?
And how sensitive is freesurfer to artifacts in the T2 scan?
Is there a good reference for this/
Thanks and best - Don
