Hi James
if it is registered to MNI space I guess you could do vol2surf directly
on fsaverage, but it won't be very accurate and will for sure miss things
cheers
Bruce
On
Tue, 9 May 2017, james pardon wrote:
Thank you Bruce. What if the nifti volume has not been processed at all in
Freesur
You can use mri_coreg to register the volume to fsaverage, then use the
registration when running freeview or tksurfer
On 5/9/17 10:19 AM, james pardon wrote:
Thank you Bruce. What if the nifti volume has not been processed at
all in Freesurfer? My only aim is to illustrate an overlay on
FSAV
Thank you Bruce. What if the nifti volume has not been processed at all in
Freesurfer? My only aim is to illustrate an overlay on FSAVERAGE, with the
obvious caveat of skipping surface construction for this nifti.
Thanks,
James
On Tue, May 9, 2017 at 2:42 PM, Bruce Fischl
wrote:
> if the nifti
if the nifti volume is from an individual subject that has been run through
recon-all (e.g. an fmri map):
1. Use bbregister to register the fmri to the recon surfaces
2. Use mri_volsurf to sample the fmri data onto the surface
3. Use mri_surf2surf to map from the individual to fsaverage
cheers
Dear All,
Apologies in advance for the naive question. Could you please let me know
what is the best way of transferring a nifti overlay volume to fsaverage,
solely for illustration purposes? I think I should start by registering
with fsaverage volume and then overlay with Freeview, but I'm not s
