Re: [Freesurfer] ill conditioned matrix

2023-07-20 Thread Douglas N. Greve
External Email - Use Caution Not sure. My guess is that it is because TicFemale only has 5 subjects  and you are trying to compute 4 parameters from them, leaving only 1 DOF. If you want more help, please send the design matrix (Xg.dat) -- you sent the contrast matrix. On 7/5/2

[Freesurfer] ill conditioned matrix

2023-07-04 Thread 조상아
External Email - Use Caution I attached fsgd, matrix and error captured file I don't know why this error occurs. Tic_structure.fsgd Description: Binary data lh-Avg-thickness-age-Cor.mtx Description: Binary data ___ Freesurfer mailing

Re: [Freesurfer] ill conditioned matrix with covariates that are unequal between groups

2013-10-22 Thread Douglas N Greve
On 10/22/2013 01:19 PM, Laura M. Tully wrote: > Thanks for the suggestions Doug, I have a few clarifying questions > below, to make sure I understand everything. > > > On Tue, Oct 22, 2013 at 8:02 AM, Douglas N Greve > mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > The duration of illnessis

Re: [Freesurfer] ill conditioned matrix with covariates that are unequal between groups

2013-10-22 Thread Laura M. Tully
Thanks for the suggestions Doug, I have a few clarifying questions below, to make sure I understand everything. On Tue, Oct 22, 2013 at 8:02 AM, Douglas N Greve wrote: > > The duration of illnessis always 0 for your healthy controls(which is > obviously reasonable). The problem is that mri_glmfi

Re: [Freesurfer] ill conditioned matrix with covariates that are unequal between groups

2013-10-22 Thread Douglas N Greve
The duration of illnessis always 0 for your healthy controls(which is obviously reasonable). The problem is that mri_glmfit is creating a regressor of all 0s to model this duration and this is causing the ill-conditionedness. There are several things you can do: 1. Create your own design matri

[Freesurfer] ill conditioned matrix with covariates that are unequal between groups

2013-10-21 Thread Laura M. Tully
Hello freesurfers, I'm trying to run mri_glmfit between groups analysis (patients vs. controls) with gender, age, medication (continuous), and duration of illness as covariates. The problem is, only the patients have medication and duration of illness values - by virtue of being control participan