Hi Joana,
Sorry for the delayed response. I'm a bit puzzled because it really
looks like a visualization issue in freeview. Could you please send me
the original *.mgz files, so I can try the visualization myself?
Thanks,
Koen
On Mon, Jun 23, 2014 at 9:38 PM, Joana Braga Pereira
wrote:
> Dear
Dear Koen and Freesurfers,
I haven't receive any further replies regarding the black lines surrounding
the subfields I found in the sample of subjects I am analyzing.
As I said the subjects are quite young (9-14 years of age) and I visualized
the subfields with Freeview.
Do you have any idea why
Hi Koen,
Thanks for such a prompt reply.
I visualized it in freeview with:
freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz
-p-labels posterior_right* posterior_Right-Hippocampus.mgz -p-prefix
posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt
Thanks,
Joana
20
Hi Joana,
This looks like a visualization issue rather than a segmentation error to
me. How did you visualize this?
Koen
On Jun 13, 2014 2:59 PM, "Joana Braga Pereira"
wrote:
> Dear all,
>
> I'm running the GEMS tool in Freesurfer 5.3 to measure the volumes of
> hippocampal subfields in subjec
