20 19:07
To: Freesurfer support list
Subject: Re: [Freesurfer] hippocampal-subfields-T1 error
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Date: Friday, March 27, 2020 at 14:39
To: "freesurfer@nmr.mgh.harvard.edu"
Subject: [Freesurfer] hippocampal-subfields-T1 error
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Dear FreeSurfer Experts,
FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0
Platform: Se
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To clarify, upon copying the entire FreeSurfer 6.0 package to our personal
directory, we have then downloaded the matlab runtime MCRv80 folder to that
directory and the issue does not appear to be the hippocampal-subfields-T1
pipeline accessing that.
glad it worked out
Bruce
On Fri, 13 Sep 2019, 3 6 wrote:
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Hi Bruce,
I checked the alias, I really aliased mv to “mv -i”, and it worked
automatically, after I unaliased.
Thanks for your help.
Best regards,
Guodong
在
2019年9月13日，上午12:00，f
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Hi Bruce,
I checked the alias, I really aliased mv to “mv -i”, and it worked
automatically, after I unaliased.
Thanks for your help.
Best regards,
Guodong
> 在 2019年9月13日，上午12:00，freesurfer-requ...@nmr.mgh.harvard.edu 写道：
>
> Re: Hippocampal-subfie
Hi Guodong
Hmmm, not sure what is doing that, but my guess is you have mv aliased. Can
you type:
which mv
and see if you have it aliased to "mv -i" or some such?
cheers
Bruce
On Thu, 12 Sep 2019,
3 6 wrote:
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Hello FreeSurfer Developers,
I'm attempt
: Re: [Freesurfer] hippocampal subfields - T1
Hi Batool,
It’s not ideal, but if FreeSurfer does a decent job with the recon, something
decent should come out of the subfields.
Cheers,
/Eugenio
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
Hi Batool,
It’s not ideal, but if FreeSurfer does a decent job with the recon, something
decent should come out of the subfields.
Cheers,
/Eugenio
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl
Hi,
I was wondering if the hippocampal subfields analysis can still run on a lower
resolution T1 scan than 1mm? One of our datasets has T1 scans with these
dimensions: .93 x .93 x 1.3 .
Would it still run on this dataset, if it's not the standard 1mm to begin with?
Thanks!
Batool
__
Hello Carl,
I was unable to reproduce the error on a test data set using the same
version of OSX. Any chance you would be able to provide me with your
subject data?
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
Thanks.
-Zeke
On 01/26/2016 09:55 AM, Carl Anderson wrote:
> Hi
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From: "Daniele Orlandi"
To: "Freesurfer support list"
Sent: Wednesday, November 18, 2015 10:20:10 AM
Subject: [Freesurfer] -hippocampal-subfields-T1
dear all,
I'm running analysis with the new FS-v6.0 usi
dear all,
I'm running analysis with the new FS-v6.0 using the flag
-hippocampal-subfields-T1 and I get the following error:
none
Matrix:
-3.3 0 0
0 0 -3.3
0 3.3 0
Offset: [-34.0783, 128.423, -71.9905]
Center: [0, 0, 0]
Translation: [-34.0783, 128.423, -71.9905]
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