i, Zahra
Sent: Thursday, January 2, 2020 3:40 PM
To: Greve, Douglas N.,Ph.D. ;
freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] highres fMRI selxavg error
I did run it from the shell and figured out what the problem was!
Thanks a lot!!
Mona
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
From: Greve, Douglas N.,Ph.D.
Sent: Thursday, January 2, 2020 3:25 PM
To: Nasiriavanaki, Zahra ;
freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] highres fMRI selxavg error
It appears to be dying on this command
mris_fwhm --mask
/autofs/space/oprah_001/users/zn025
d.edu>;
freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] highres fMRI selxavg error
The easiest thing to do is to probably do the concatenation by hand, eg,
mri_concat subj/sess01/analysis/contrast/ces.nii
ay, January 2, 2020 11:46 AM
To: Nasiriavanaki, Zahra
<mailto:znasiriavan...@mgh.harvard.edu>;
freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] highres fMRI selxavg error
When you say you need t
Nasiriavanaki, Zahra
<mailto:znasiriavan...@mgh.harvard.edu>;
freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] highres fMRI selxavg error
When you say you need to see them together, what does
l Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
From: Greve, Douglas N.,Ph.D.
Sent: Thursday, January 2, 2020 11:46 AM
To: Nasiriavanaki, Zahra ;
freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] highres fMRI selxavg error
When you say
AM
To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] highres fMRI selxavg error
Why are you combining them into one bold folder?
On 12/30/2019 9:09 AM, Nasiriavanaki, Zahra wrote:
Dear Freesurfer experts
Happy H
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Greve, Douglas N.,Ph.D.
Sent: Thursday, January 2, 2020 10:57 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] highres fMRI
Why are you combining them into one bold folder?
On 12/30/2019 9:09 AM, Nasiriavanaki, Zahra wrote:
Dear Freesurfer experts
Happy Holidays!
I have a subject with two highres fMRI scan sessions. Attached you can see an
image, showing how I organized the sub-folders.
I preprocessed the bold1 and b
