Re: [Freesurfer] group analysis for same group in 2 conditions

2020-03-06 Thread Douglas N. Greve
What quantity do you want to compare across subjects/goggle condition? Sorry for the delay, I have not worked much with the retinotopy code in a while and don't have it at my fingertips On 3/2/2020 9:08 AM, Marco Ninghetto wrote: External Email - Use Caution Since that each subject

Re: [Freesurfer] group analysis for same group in 2 conditions

2020-03-02 Thread Marco Ninghetto
External Email - Use Caution Since that each subject undergoes to both conditions and functional images are in 2 different folders, I modify my folder structure and put functional folders together. It means that now I have a main functional folder (pRFs_functionals) in which I have

Re: [Freesurfer] group analysis for same group in 2 conditions

2020-02-28 Thread Marco Ninghetto
External Email - Use Caution Thanks for your support. Here my "mkanalysis-sess" command: mkanalysis-sess -a rtopy.self.?h.ng -surface self ?h -paradigm rtopy.par > -retinotopy 41 -TR 2.5 -fsd bold -fwhm 5 -per-run I run this command for both no goggles condition (rtopy.self.?h.n

Re: [Freesurfer] group analysis for same group in 2 conditions

2020-02-28 Thread Douglas N. Greve
What quantity from the retinotopy analysis do you want to compare across subjects? Eg, the phase? Can you send your mkanalysis-sess command? On 2/28/2020 8:17 AM, Marco Ninghetto wrote: External Email - Use Caution Dear experts, I'm performing a study on visual pathways, in which each

[Freesurfer] group analysis for same group in 2 conditions

2020-02-28 Thread Marco Ninghetto
External Email - Use Caution Dear experts, I'm performing a study on visual pathways, in which each participant undergoes to 2 different conditions. One in normal sight (NG, i.e.: No Goggles) and second in narrowed sight using special goggles (YG, i.e.: Yes Goggles). I'd like to co