Re: [Freesurfer] grossly abormal brain

2015-11-17 Thread Krieger, Donald N.
d.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Anthony Dick Sent: Tuesday, November 17, 2015 9:12 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] grossly abormal brain Don, if that doesn't work, try the procedure outlined in this paper, although it

Re: [Freesurfer] grossly abormal brain

2015-11-17 Thread Anthony Dick
Don, if that doesn't work, try the procedure outlined in this paper, although it is rather involved: http://www.architalbiol.org/index.php/aib/article/viewArticle/1221 Anthony On 11/17/15 8:27 AM, Bruce Fischl wrote: Hi Don it's impossible to say. Certainly 6.0 will be your best bet as it h

Re: [Freesurfer] grossly abormal brain

2015-11-17 Thread Bruce Fischl
Hi Don it's impossible to say. Certainly 6.0 will be your best bet as it handles enlarged ventricles much better. Try 6.0 beta with the -bigventricles flag and see how it goes cheers Bruce On Tue, 17 Nov 2015, Krieger, Donald N. wrote: A few cuts from a grossly abnormal scan are attached.

[Freesurfer] grossly abormal brain

2015-11-17 Thread Krieger, Donald N.
A few cuts from a grossly abnormal scan are attached. Do you think freesurfer can effectively segment this one? If so, please point us in the right direction to get started with it. Thanks. - Don ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu