We don't compute density. You can run mri_compute_volume_fractions to
produce such images
doug
On 07/31/2014 09:54 PM, Qiongmin wrote:
> Dear All,
>
> I wonder if there are any functions that can calculate the grey matter
> density of the vertices or in the ROI manner? I figured out that Free
Dear All,
I wonder if there are any functions that can calculate the grey matter density
of the vertices or in the ROI manner? I figured out that Freesurfer can give
the thickness, area, volume, curv, but I can not find grey matter density
anywhere.
Thanks for any advice!
Qiongmin
__
dchin...@seas.upenn.edu; freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] Grey Matter Density?
Hi Matt,
I don't know what the MNI considers and whether it includes things we don't,
sorry.
Bruce
On Wed, 30 Jun 2010, Matthew Ku wrote:
> Dear Professor Fischl,
>
>
>
> Than
know what MINC considers
grey matter in comparison to what Freesurfer considers grey matter?
Best,
Matt
From: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Wednesday, June 23, 2010 5:40 PM
To: Schwartz, Carl R.E.
Cc: mat...@seas.upenn.edu
Subject: Re: [Freesurfer] Grey Matter Densit
Fischl [mailto:fis...@nmr.mgh.harvard.edu]
Sent: Wednesday, June 23, 2010 5:40 PM
To: Schwartz, Carl R.E.
Cc: mat...@seas.upenn.edu
Subject: Re: [Freesurfer] Grey Matter Density?
Sure, that would be great
On Jun 23, 2010, at 5:21 PM, "Schwartz, Carl R.E."
wrote:
Bruce, if you
t,
> Matt
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
> Sent: Wednesday, June 23, 2010 3:47 PM
> To: Matthew Ku
> Cc: freesurfer@nmr.mgh.harvard.edu; dchin...@se
...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: Wednesday, June 23, 2010 3:47 PM
To: Matthew Ku
Cc: freesurfer@nmr.mgh.harvard.edu; dchin...@seas.upenn.edu
Subject: Re: [Freesurfer] Grey Matter Density?
Hi Matt,
you could use mri_binarize to extract a
t; Cc: dchin...@seas.upenn.edu; freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] Grey Matter Density?
>
> Hi Matt,
>
> density is really just average gray matter per unit volume. Why would you
> want to compute such a thing? I think the way SPM/FSL does it is to take a
>
fer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: Wednesday, June 23, 2010 3:20 PM
To: Matthew Ku
Cc: dchin...@seas.upenn.edu; freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Grey Matter Density?
Hi Matt,
density is really just average gray matter per unit volume. Why would you
Hi Matt,
density is really just average gray matter per unit volume. Why would you
want to compute such a thing? I think the way SPM/FSL does it is to take
a binary segmentation and smooth it, but you can check with them.
cheers
Bruce
On Wed, 23
Jun 2010, Matthew Ku wrote:
> Hi Freesurfer Exp
Hi Freesurfer Experts,
I have been running Freesurfer to calculate the grey matter volume of
pediatric brains but I was wondering if there was a method to determine grey
matter density using Freesurfer? I have read a question previously posted
asking a similar question, but there had been no re
11 matches
Mail list logo
