Re: [Freesurfer] getting vertex numbers

2009-02-19 Thread Bruce Fischl
Hi Lars, you want to do "custom fill" then click the "over statistical threshold " option. Can't remember the exact name... cheers, Bruce On Wed, 18 Feb 2009, Lars M. Rimol wrote: Hi, I've done a glm model fit comparing cortical thickness between two groups, and have certain areas ("blobs"

Re: [Freesurfer] getting vertex numbers

2009-02-18 Thread Rudolph Pienaar
Lars M. Rimol wrote: Hi, I've done a glm model fit comparing cortical thickness between two groups, and have certain areas ("blobs") on the cortical surface that are above sig. threshold. I'd like to get a list of the vertex numbers for each of these significant areas, which do not correspond

Re: [Freesurfer] getting vertex numbers

2009-02-18 Thread Pratap Kunwar
Hi, Try like this, Click inside your blobs. Then click on the Custom Fill botton and then select "upto functional value below threshold". This will select the cluster above the given p value (1.3 in our case). Then click "fill". Then click file->label->save selected label this should work. pr

[Freesurfer] getting vertex numbers

2009-02-18 Thread Lars M. Rimol
Hi, I've done a glm model fit comparing cortical thickness between two groups, and have certain areas ("blobs") on the cortical surface that are above sig. threshold. I'd like to get a list of the vertex numbers for each of these significant areas, which do not correspond to the parcellations in FS