Re: [Freesurfer] general question concerning orientation

2006-07-17 Thread Doug Greve
It depends on how you get your images in the first place. If you use mri_convert to convert from dicom files, then it uses information in the dicom header. I'm attaching the rules that mri_convert uses. If you get your data from somewhere else, then mri_convert will try to find the orientatio

[Freesurfer] general question concerning orientation

2006-07-17 Thread Chacko Cherian
Hello everyone, orientation i guess is quite an issue. Well how does,Freesurfer determine orientation of the image.Do I have to know how the image has been processed before it reaches me or is there any other way to find out?Does it have to do with the 'flip'? I checked the orientation of an imag