Re: [Freesurfer] Gcut error: gcutted brain is much smaller than the mask

2022-03-21 Thread Begüm Cerrahoğlu
uesday, March 15, 2022 at 5:26 AM > *To: *freesurfer@nmr.mgh.harvard.edu > *Subject: *[Freesurfer] Gcut error: gcutted brain is much smaller than > the mask > > *External Email - Use Caution* > > Dear developers, > I am trying to clean up the extra dura left a

Re: [Freesurfer] Gcut error: gcutted brain is much smaller than the mask

2022-03-16 Thread Hoopes, Andrew
Begüm Cerrahoğlu Date: Tuesday, March 15, 2022 at 5:26 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Gcut error: gcutted brain is much smaller than the mask External Email - Use Caution Dear developers, I am trying to clean up the extra dura left after skullstripping. Watershed

[Freesurfer] Gcut error: gcutted brain is much smaller than the mask

2022-03-15 Thread Begüm Cerrahoğlu
External Email - Use Caution Dear developers, I am trying to clean up the extra dura left after skullstripping. Watershed parameter does not prove to be much helpful and when I try gcut I get the error below. I checked the release notes of freesurfer 5.1 and mri_gcut is not run by

Re: [Freesurfer] gcut error

2018-03-05 Thread Bruce Fischl
hmmm, it looks like most of the memory on your machine is in use by other processes. Can you terminate them and try again? cheers Bruce On Mon, 5 Mar 2018, Anna Daniels wrote: Dear FreeSurfer team, we are trying to remove dura from the brainmask automatically as described in the SkullStrip