Re: [Freesurfer] fscalc.fsl bad dim error

2015-02-01 Thread Douglas Greve
what is your command line? Can you reduce it down to a file that seems to be giving you problems? On 2/1/15 1:48 PM, Jonathan DuBois wrote: Hi Freesurfers, I am trying to use fscalc.fsl to do calculations on an fsaverage vertex map of values (mgh files). In some of these files, but not all,

[Freesurfer] fscalc.fsl bad dim error

2015-02-01 Thread Jonathan DuBois
Hi Freesurfers, I am trying to use fscalc.fsl to do calculations on an fsaverage vertex map of values (mgh files). In some of these files, but not all, I get the following error: ** ERROR: nifti_convert_nhdr2nim: bad dim[1] ** ERROR (nifti_image_read): cannot create nifti image from header './tmp