Re: [Freesurfer] fsaverage label into functional space

2019-10-10 Thread Adam Martersteck
External Email - Use Caution To confirm, your label is starting on the fsaverage surface. You can open tksurfer fsaverage ?h pial and open the label and it shows up? From my experience using fcseed-sess & fcseed-config using FS v6.0.0 what you want to do is move the label from fsa

Re: [Freesurfer] fsaverage label into functional space

2019-10-10 Thread Greve, Douglas N.,Ph.D.
This appears to be a bug in mri_label2vol when you specify a surface. Instead, you can create a volume in the conformed space, and then use mri_label2vol with that volume as the --seg input. BTW, you should use mri_label2label to map from fsaverage into the individual subject space, then do the

[Freesurfer] fsaverage label into functional space

2019-10-10 Thread Lauri Tuominen
External Email - Use Caution Dear FreeSurfers! I would like to confirm something before I proceed with my analyses. I think I am just confused again. I am doing resting state analysis using fsfast. I am trying to use a label defined in the fsaverage space as a seed using the