Re: [Freesurfer] freesurfer fornix

2020-01-20 Thread Annink, K.V.
External Email - Use Caution Dear all, I have a question about the fornix segmentation. First I have used the comment mri_cc -f to create fornix.mgz. After all files were created, I have used mri_segstats to create the stats file. Is this correct? In the output file the nvoxes

Re: [Freesurfer] FreeSurfer: fornix segmentation

2009-08-13 Thread Bruce Fischl
Hi Judit, we haven't run this a ton, so there certainly may still be problems in the algorithm. If you send us the dataset we'll take a look. cheers, Bruce On Thu, 13 Aug 2009, Judit Haasz wrote: > Hi, > > I have run mri_cc -fornix. In some cases I encountered the following > problem. Although

[Freesurfer] FreeSurfer: fornix segmentation

2009-08-13 Thread Judit Haasz
Hi, I have run mri_cc -fornix. In some cases I encountered the following problem. Although fornix.mgz was created, and it seems the program has run properly, the file (same size as those who contain fornix) turns to be empty. Looking at the input volume, I could identify fornix. Could you help