Re: [Freesurfer] freesurfer flag for multiple edited volumes

2021-01-13 Thread Nolan, Jackson
oun...@nmr.mgh.harvard.edu> mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Dincer, Aylin mailto:aylin.din...@wustl.edu>> Sent: Wednesday, January 6, 2021 1:05 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> mailto:freesurfer@nmr.

Re: [Freesurfer] freesurfer flag for multiple edited volumes

2021-01-13 Thread Dincer, Aylin
, January 6, 2021 1:05 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] freesurfer flag for multiple edited volumes External Email - Use Caution Hello FreeSurfer Experts, If I need

Re: [Freesurfer] freesurfer flag for multiple edited volumes

2021-01-13 Thread Nolan, Jackson
arvard.edu Best, Jackson From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Dincer, Aylin Sent: Wednesday, January 6, 2021 1:05 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] freesurfer flag for multiple edited volumes External Ema

[Freesurfer] freesurfer flag for multiple edited volumes

2021-01-06 Thread Dincer, Aylin
External Email - Use Caution Hello FreeSurfer Experts, If I need to manually edit both the brainmask.mgz and the wm.mgz in a FreeSurfer, what are the recommended flags when rerunning recon-all with the edits (-all, -autorecon2, etc)? Or is it recommended to run an edited volume