From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Bruce Fischl
Sent: 12 March 2020 22:07
To: Freesurfer support list
Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
Hi Frank
sorry, I've been busy with local deadlines that are over now. Can you se
freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: 11 March 2020 21:52
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
it should not really affect it
On 3/10/2020 10:22 AM, Tim Schäfer wrote:
Ext
rds
Frank
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Douglas N. Greve
Sent: 11 March 2020 21:52
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
it should not really affect it
On 3/10/2020 10:22 A
ut results?
>>
>> Regards
>>
>> Frank
>>
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> on behalf of Frank Chau
>>
>> Sent: 06 March 2020 22:17
>> To: Freesurfer support list
>> Subject: Re: [Freesurfer
u
>
> Sent: 06 March 2020 22:17
> To: Freesurfer support list
> Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
>
> External Email - Use Caution
>
> Dear Tim,
>
> The FOV of my T1 series is 256 x 240. Is it the FOV of
...@nmr.mgh.harvard.edu
on behalf of Frank Chau
Sent: 06 March 2020 22:17
To: Freesurfer support list
Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
External Email - Use Caution
Dear Tim,
The FOV of my T1 series is 256 x 240. Is it the FOV of the T1 series will
...@nmr.mgh.harvard.edu
on behalf of Tim Schäfer
Sent: 05 March 2020 2:25
To: Freesurfer support list
Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
External Email - Use Caution
Thanks for providing the image. Looks fine to me as well.
What is a bit strange is
Sent: 05 March 2020 2:25
To: Freesurfer support list
Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
External Email - Use Caution
Thanks for providing the image. Looks fine to me as well.
What is a bit strange is that when running `mri_info` on th
Freesurfer support list
> Subject: Re: [Freesurfer] freesurfer- recon-all "exited with ERRORS"
>
> External Email - Use Caution
>
> Dear Frank,
>
> if you search the log in your Dropbox for 'error', this comes up:
>
>
> ER
External Email - Use Caution
Dear Frank,
if you search the log in your Dropbox for 'error', this comes up:
ERROR! FOV=284.000 > 256
Include the flag -cw256 with recon-all!
Inspect orig.mgz to ensure the head is fully visible.
Did you have a look at the orig.mgz?
Best,
External Email - Use Caution
Hello FreeSurfer Developers,
I ran a recon-all on a recent batch of T1 Nifti files and all ended with
"exited with ERRORS". For example: "recon-all -s Chan_Pui_Kim_42M_T1 exited
with ERRORS at Sat Jan 11 01:32:55 HKT 2020".
I've searched the email a
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