Re: [Freesurfer] freediffusion dtrecon mask

2007-07-25 Thread Dennis Jen
Hi Akram, I have access to that directory, but those logs don't seem to be there. What was the exact command you ran using dtrecon? Thanks, Dennis Akram Bakkour wrote: Hello, [EMAIL PROTECTED] doesn't seem to exist, so I'm hoping one of you can help me out. I seem to be having trouble

[Freesurfer] freediffusion dtrecon mask

2007-07-25 Thread Akram Bakkour
Hello, [EMAIL PROTECTED] doesn't seem to exist, so I'm hoping one of you can help me out. I seem to be having trouble with the -mask 0 flag in dtrecon. It doesn't apply a brainmask! I tried -mask 1 but that didn't work either. I unpacked the data properly, then ran diff-flirt -i f -o unwarp/f