Re: [Freesurfer] failed -base processing with 1 tp

2017-09-29 Thread Martin Reuter
Hi Michelle, it should work like this. I don't know if it was tested with the -3T and -mprage flags. You can try to omit these flags (for testing only). Also the SB017 has been processed cross sectionally before, right? For debugging, you can also look at the individual steps in the base pro

[Freesurfer] failed -base processing with 1 tp

2017-09-28 Thread Michelle VanTieghem
Hello, I am running the -base processing so that I can create a subject-specific template for the -long processing. I have some subjects with only 1 timepoint. According to the website, all versions 5.2 and higher can handle 1 time point when making the base. I am using freesurfer 5.3. However, w