Re: [Freesurfer] extracting subcortical volumes from longitudinal processed data

Hi Amanda, does your long.qdec.table.dat have fsid-base as the second column (the first is fsid)? Also maybe make the long.qdec.dat space separated? Cheers, Martin On 07/29/2015 09:54 AM, Worker, Amanda wrote: Hi all, I am trying to extract subcortical volumes from data that has been

[Freesurfer] extracting subcortical volumes from longitudinal processed data

Hi all, I am trying to extract subcortical volumes from data that has been processed longitudinally, but I am getting the following error. [k1204763@nanlnx9 SAGA]0% asegstats2table --qdec-long long.qdec.table.dat --stats aseg.stats --tablefile aseg.table.txt SUBJECTS_DIR : /home/k1204763/imag