Can you send the full terminal output? Do all subjects have the same paradigm
files?
On 12/21/2020 5:24 AM, Nina Khatibi wrote:
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No, I have checked them all.
On Thu, Dec 17, 2020 at 6:05 PM Greve, Douglas N.,Ph.D.
mailto:dgr...@mgh.harvard.edu>> wrote:
Are
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No, I have checked them all.
On Thu, Dec 17, 2020 at 6:05 PM Greve, Douglas N.,Ph.D. <
dgr...@mgh.harvard.edu> wrote:
> Are there presentations that are simultaneous?
>
> On 12/12/2020 3:19 AM, Nina Khatibi wrote:
>
> External Email - Use Caut
Are there presentations that are simultaneous?
On 12/12/2020 3:19 AM, Nina Khatibi wrote:
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Hi,
I'm using a functional analyse with selxavg3-sess, i have 25 subjects and each
subject contains 15 runs, I've done plenty of analyses with different paradigm
files
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Hi,
I'm using a functional analyse with selxavg3-sess, i have 25 subjects and
each subject contains 15 runs, I've done plenty of analyses with different
paradigm files, but now with a paradigm file of 5 conditions, I face an
error on subject 22 run 12,
At 1.19 sec TR, you still only go out to 285 sec, so you will not get
condition 8. You should not be playing around with the TR. the TR in the
dicom is probably right. Likewise, the paradigm is the paradigm. There's
nothing I can really help you with here -- you need to find out for sure
what t
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Hi Dr. Greve,
After looking through my matlab code with the task protocol, I saw that it
ended with the rest condition, not the 8th condition. I changed the
paradigm file to correct this and changed the TR to 1.19 (which I also
double checked). I still
It looks like the problem is that condition 8 is never presented. There
are 240 time points in the run. At a TR of 1.08, the run ends at 259.2
seconds, so neither condition 7 nor 8 are actually presented.
On 9/28/2020 3:12 PM, Erica Israel wrote:
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Hi there
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Hi list,
I have run the FS-FAST analysis in line with the standard procedures that I use
routinely.
With new data, selxavg3-sess produces an errror: there is a mis-matched between
the TE in the analysis (=3) and the TE in the data (=0). I have chec
hii doug
Thank you so much.. :)
Regards
Neha
On Tue, Jan 12, 2016 at 10:02 PM, Douglas N Greve wrote:
> Sorry, I've attached a matlab script. Copy it to $FREESURFER_HOME/matlab
> and try again
> doug
>
> On 01/12/2016 09:59 AM, neha hooda wrote:
>
>> hii doug
>>
>> Thanks for the reply. But it
Sorry, I've attached a matlab script. Copy it to $FREESURFER_HOME/matlab
and try again
doug
On 01/12/2016 09:59 AM, neha hooda wrote:
hii doug
Thanks for the reply. But it gives the error.
--
--- matlab output
MATLAB is selectin
hii doug
Thanks for the reply. But it gives the error.
--
--- matlab output
MATLAB is selecting SOFTWARE OPENGL rendering.
< M A T L A B (R) >
Copyright 1984-2014 The MathWorks, Inc.
Hi Neha, I've attached a file called load_nifti.m. Put this in
$FREESURFER_HOME/matlab (after making a backup of what is there). Then
re-run and let me know if that fixes the problem.
doug
On 01/09/2016 06:00 AM, neha hooda wrote:
Hii
I am using freesurfer to find the resting state connectiv
Hii
I am using freesurfer to find the resting state connectivity. I used
selxavg3-sess to analyze the data. But it neither terminates nor gives the
error. Any help will be appreciated.
Regards
Neha
--
selxavg3-sess logfile is
/home/neh
Hi,
I ran the selxavg3-sess with -sf to process a group of 12 sessions (see
below).
selxavg3-sess -sf Sessid -a Analysis.rh
After hours, it finished without any error. The last message was:
rawfunc2surf-sess completed
then: then/endif not found.
But there is no "Anal
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