On 03/03/2016 02:46 PM, Ji Won Bang wrote:
> Thanks for your reply. It works.
>
> I have 1 more general question.
>
> When running: mktemplate-sess -s $SUBJECT -df sessdirfile -fsd bold_day1
>
> I get 2 files (template.log & template.nii.gz) under the functional
> subdirectory(bold_day1) and und
Thanks for your reply. It works.
I have 1 more general question.
When running: mktemplate-sess -s $SUBJECT -df sessdirfile -fsd bold_day1
I get 2 files (template.log & template.nii.gz) under the functional
subdirectory(bold_day1) and under each run(001, 002 etc).
When I run: mc-sess -s $SUBJECT
what is your command line? You have to use -per-run and not -per-session
On 03/03/2016 12:22 PM, Ji Won Bang wrote:
> Dear. freesurfer experts.
>
> Hi. I'm using freesurfer version 5.3.0.
>
> I tried mc-sess onto runs that have different number of slices.
>
> However, due to this different number
you have to use -per-run not -per-session
On 03/03/2016 12:27 PM, Ji Won Bang wrote:
> The command I used is:
>
> mktemplate-sess -s $SUBJECT -df sessdirfile -fsd bold_retino
>
> mc-sess -s $SUBJECT -df sessdirfile -fsd bold_retino -per-session
>
> Thank you.
>
> Best,
> Ji Won
>
>
>
> 2016-03-03
The command I used is:
mktemplate-sess -s $SUBJECT -df sessdirfile -fsd bold_retino
mc-sess -s $SUBJECT -df sessdirfile -fsd bold_retino -per-session
Thank you.
Best,
Ji Won
2016-03-03 12:22 GMT-05:00 Ji Won Bang :
> Dear. freesurfer experts.
>
> Hi. I'm using freesurfer version 5.3.0.
>
>
Dear. freesurfer experts.
Hi. I'm using freesurfer version 5.3.0.
I tried mc-sess onto runs that have different number of slices.
However, due to this different number of slices in different runs, mc-sess
gives an error.
I expected that running mc-sess in freesurfer version 5.3.0 would handle
t
