Re: [Freesurfer] error in longitudinal stream command

2019-09-10 Thread Alexandru Hanganu
External Email - Use Caution Hello Martin, thanks a lot for your reply. It works now, and it was probably an error in my script, though the commands that were used are correct (as per log files), so I still don't know what went wrong. Maybe, for the future, the 'unmatched' error

Re: [Freesurfer] error in longitudinal stream command

2019-09-10 Thread Martin Reuter
Hi Alexandru, not sure what you mean with "unmatched" error. If this is still a problem, can you send details? Best, Martin On Wed, 2019-08-07 at 08:31 -0400, Alexandru Hanganu wrote: > External Email - Use Caution > Hello Martin, > > I was wondering - how solved the "Unmatch

Re: [Freesurfer] error in longitudinal stream command

2019-08-07 Thread Alexandru Hanganu
External Email - Use Caution Hello Martin, I was wondering - how solved the "Unmatched" error ? In our case, this error appears for both 5.3, 6.0 and dev, on 2 different clusters. All folders exist, are filled with data and reecon-all finished without error, plus hippocampus and

Re: [Freesurfer] error in longitudinal stream command

2018-08-30 Thread Martin Reuter
12:14 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] error in longitudinal stream command > > Hi Valeria, > > what version of FS are you using (also is it a local install or the > system install)? > > Also try to re-type the command in the shell (don

Re: [Freesurfer] error in longitudinal stream command

2018-08-29 Thread Barletta, Valeria
d.edu Subject: Re: [Freesurfer] error in longitudinal stream command Hi Valeria, what version of FS are you using (also is it a local install or the system install)? Also try to re-type the command in the shell (don't run it from a script) could be that there are invisible characters , like ta

Re: [Freesurfer] error in longitudinal stream command

2018-08-29 Thread Martin Reuter
Hi Valeria, what version of FS are you using (also is it a local install or the system install)? Also try to re-type the command in the shell (don't run it from a script) could be that there are invisible characters , like tab etc from copy paste that mess things up. Best, Martin On Wed, 20

[Freesurfer] error in longitudinal stream command

2018-08-29 Thread Barletta, Valeria
Dear Freesurfers, I am trying to re-launch a longitudinal time point after edits by using the command: recon-all -long MS069_R01_01_Bay8_3T_03102014.long.MS069_base MS069_base -all But I am obtaining this type of error: Unmatched ". I also tried to launch it on Launchpad but I have an error al