[Freesurfer] Error in Analyze: command failed: mri_concat /

2015-06-06 Thread Annemarie Brandhofe
*Dear Freesurfer experts,* I am conducting cortical thickness analysis using freesurfer-5.3.0 and have received the error message "*Error in Analyze: command failed: mri_concat /" *when clicking the 'Analyze' button in order to run a qdec group analsysis (please see the output below). Prior to

Re: [Freesurfer] error in analyze command failed: mri_concat

2012-11-20 Thread Douglas N Greve
__ > From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] > Sent: 20 November 2012 21:04 > To: Berg, S.F. van den > Subject: Re: [Freesurfer] error in analyze command failed: mri_concat > > If you change the order or leave one out, does it still crash? > > On 11/1

Re: [Freesurfer] error in analyze command failed: mri_concat

2012-11-16 Thread Berg, S.F. van den
Hi Doug, I run the mri_concat command with 9 subjects in the command line. for the LH thickness and volume. A segmentation fault is the problem. What do i have to do in this case? Many thanks, Stan freesurfer-Linux-centos5_x86_64-dev-20110315 SUBJECTS_DIR /data1/proje

Re: [Freesurfer] error in analyze command failed: mri_concat

2012-11-13 Thread Douglas N Greve
Hi Stan, can you run that mri_concat command from the terminal command line and send me the resulting terminal output? I've put the command below doug mri_concat /data1/projects/ysbrand-vumc/pddatabase-freesurfer/0050/surf/lh.volume.fwhm10.fsaverage.mgh /data1/projects/ysbrand-vumc/pddatabase

[Freesurfer] error in analyze command failed: mri_concat

2012-11-13 Thread Berg, S.F. van den
Hello Freesurfer experts, I have got some problems with qdec. For testing my data i make an design with age, sexe and right and left hippocampus. The same design as the tutorial on the freesurfer wiki. When starting anlalyze i get an Error in Analyze: command failed: mri_concat /data1/project