Re: [Freesurfer] error - mri_nu_correct.mni

2016-03-19 Thread Flavia Niccolini new
Hi Douglas, I have done this but I got the following error: [hwilson@nig05 ~]$ cd /data/PDE10_PD_DENOVO/Freesurfer/DENOVO/subjects/PD1/mri [hwilson@nig05 mri]$ mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz /data/PDE10_PD_DENOVO/Freesurfer/DEN

Re: [Freesurfer] error - mri_nu_correct.mni

2016-03-15 Thread Douglas N Greve
It should all be on one line mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz On 03/14/2016 05:43 AM, Flavia Niccolini new wrote: > Hi Douglas, > > I have done this and I got the following message: > > “cd /data/PDE10_PD_DENOVO/Freesurfer/DE

Re: [Freesurfer] error - mri_nu_correct.mni

2016-03-14 Thread Flavia Niccolini new
Hi Douglas, I have done this and I got the following message: “cd /data/PDE10_PD_DENOVO/Freesurfer/DENOVO/subjects/PD1/mri hwilson@nig05 mri]$ mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale ERROR: must specify an input volume hwilson@nig05 mri]$ --i orig.mgz --o orig_n

Re: [Freesurfer] error - mri_nu_correct.mni

2016-03-07 Thread Douglas N Greve
what happens when you run the following? cd /data/PDE10_PD_DENOVO/Freesurfer/DENOVO/subjects/PD1/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz On 03/07/2016 04:09 PM, Flavia Niccolini new wrote: > Hello, > > I was wondering whether yo

[Freesurfer] error - mri_nu_correct.mni

2016-03-07 Thread Flavia Niccolini new
Hello, I was wondering whether you could help with this error: # #@# MotionCor Thu Mar 3 11:35:51 GMT 2016 Found 1 runs /data/PDE10_PD_DENOVO/Freesurfer/DENOVO/subjects/PD1/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one