if you upload the subject I'll take a look
On Fri, 6 Dec 2013, Adam Mezher
wrote:
Hi Bruce,
I'm not too sure why it is blank, the talairach.lta and .xfm look fine to me
(but I could be mistaken, see below). The brainmask.mgz is actually quite
grainy but I'm not sure if that alone would contri
Hi Bruce,
I'm not too sure why it is blank, the talairach.lta and .xfm look fine to
me (but I could be mistaken, see below). The brainmask.mgz is actually
quite grainy but I'm not sure if that alone would contribute to this issue.
# transform file transforms/talairach.lta
# created by vhasfcngp o
Hi Adam
yes, this is mri_cc in an infinite loop. This bug is fixed in 5.3, but it
won't generate anything reasonable with an empty input volume. Do you
know why it is blank? Is the brainmask.mgz ok? The talariach.lta and .xfm?
cheers
Bruce
On Fri, 6 Dec 2013, Adam Mezher wrote:
> Hi all,
>
Hi all,
I'm having a similar issue to the one described below - the mri_cc step
seems stuck and goes on for days (still going); I'm using FreeSurfer
version 5.1 as well. Like Bruce said in another thread, this could be due
to an empty norm.mgz file. This seems like it is my exact problem, as that
