Hi Joshua
The thickness isn't well defined in the hippocampus, so you don't want to use
it there. Use volumes of the subfields instead
Cheers
Bruce
On Jun 12, 2013, at 10:35 PM, Joshua deSouza wrote:
> Hello Bruce,
>
> Yes, I am using the surfaces for this. I am trying to find cortical thick
Hello Bruce,
Yes, I am using the surfaces for this. I am trying to find cortical
thickness differences between populations. I do not think that the mask
covers the entire hippocampal area, just leaving out the corpus callosum.
How would I include these areas into the mask?
Thank you,
Joshua
On
Hi Joshua
are you using the surfaces for this? If so, you shouldn't as they are
undefined in those regions (since they have internal laminar structure
that is different than what we expect). What are you trying to achieve?
cheers
Bruce
On Tue, 11 Jun 2013, Joshua deSouza wrote:
> Hello all,
>
Hello all,
I am having a problem with generating values of the vertices at the
hippocampal area. I believe it is a masking issue as reviewing the mask
after the glmfit analysis I see that the mask does not cover the entire
medial region excluding the corpus callosum. Can I do anything to change
th
-- Forwarded message --
From: Daniel H Choi <[EMAIL PROTECTED]>
Date: Fri, Aug 8, 2008 at 11:10 AM
Subject: Re: [Freesurfer] editing masks
To: Bruce Fischl <[EMAIL PROTECTED]>
Hi all,
I was wondering how to edit the voxels of a mask (the name of which is
"lh.
Sorry, I don't understand. Where did you get the mask? Or are you trying
to create it from scratch?
On Tue, 5 Aug 2008, Daniel H Choi wrote:
Hi,
I have a binary mask that I apply to my .mgz files. It allows me to block
everything outside of the STG as 0 and everything inside the way it is. I
w
Hi,
I have a binary mask that I apply to my .mgz files. It allows me to block
everything outside of the STG as 0 and everything inside the way it is. I
was wondering though how I might go about editing the mask? I see that there
are random voxels that have been left out and I would like to fill th
