Re: [Freesurfer] dt_recon image inputs -i flag

2016-04-05 Thread Anastasia Yendiki
Hi Bryan - It'll convert whatever input you give it to nifti, so it's fine if your input is already nifti. Best, a.y On Wed, 6 Apr 2016, Chiu, Bryan (PHTH) wrote: Hi, I’m looking to do some DTI analysis with dt_recon. I have Philips acquired DTI images in par/rec. I ran dcm2nii and have r

[Freesurfer] dt_recon image inputs -i flag

2016-04-05 Thread Chiu, Bryan (PHTH)
Hi, I’m looking to do some DTI analysis with dt_recon. I have Philips acquired DTI images in par/rec. I ran dcm2nii and have retrieved the associated *bval, *bvec and *nii.gz files that come out. In the tutorial it mentions the -i flag requiring a dcm image. Is it possible to pass a *.nii.gz f