Jodie, you might also look into using the white matter parcellation.
That would allow you to select the WM from a particular gyrus.
doug
On 01/29/2013 03:31 PM, Jodie Davies-Thompson wrote:
>
> Dear Freesurfer users and experts,
>
> We are attempting to grow a mask that we have created in FSL, to
Hi Jodie
you can do this on the surface, then project the resulting label 1mm into
the white matter if I understand what you want correctly. You might also
check out the wmparc.mgz and see if it already does what you want.
cheers
Bruce
On Tue,
29 Jan 2013, Jodie Davies-Thompson wrote:
De
Dear Freesurfer users and experts,
We are attempting to grow a mask that we have created in FSL, to expand it into
white matter.
At first, we tried this in FSL using the dilM command which dilated the size of
the mask by n voxels. We then multiplied this by a segmented white matter mask
(agai
