Re: [Freesurfer] creating labels from aseg.mgz

2017-01-02 Thread Ladan Shahshahani
Hi, Thanks for the reply. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this

Re: [Freesurfer] creating labels from aseg.mgz

2017-01-01 Thread Bruce Fischl
Hi Ladan the column of -1s means that the label hasn't been sampled onto to the surface, and shouldn't matter if you are doing a volumetric analysis. cheers Bruce On Sun, 1 Jan 2017, Ladan Shahshahani wrote: > Dear experts, > > I'm trying to create labels for subcortical regions. I want to us

[Freesurfer] creating labels from aseg.mgz

2017-01-01 Thread Ladan Shahshahani
Dear experts, I'm trying to create labels for subcortical regions. I want to use these labels to extract time series from resting state fMRI data (I want all of the subcortical time series and I want them to be in mni305 space). I'm not sure if I'm doing the right thing. Here's an example of what