Re: [Freesurfer] creating labels, new atlas

2012-08-25 Thread Bruce Fischl
Hi Jeff yes, that's true, but for a GCA you will need to combine the different labels into a single .mgz volume to give to mri_ca_train. cheers Bruce On Thu, 23 Aug 2012, Jeff Thompson wrote: I found this info on the tksurfer webpage.  The label file format is interchangable with TkMedit.

Re: [Freesurfer] creating labels, new atlas

2012-08-23 Thread Jeff Thompson
I found this info on the tksurfer webpage. The label file format is interchangable with TkMedit. You can create a label in TkSurfer, save it, and load it in TkMedit, or vice versa. Jeff Thompson From: jeff_rthomp...@hotmail.com To: freesurfer@nmr.mgh.harvard.edu Subject: creating labels, n

[Freesurfer] creating labels, new atlas

2012-08-23 Thread Jeff Thompson
Hello, How can tksurfer be used to create label files for the purpose of making a new atlas, if that atlas is needed to create the surface files needed to view the brain in tksurfer? Would people use FSL to create the masks, and convert them into what is needed for freesurfer or is there anothe