Re: [Freesurfer] creating figures using f-score color scale

2013-02-25 Thread David Vazquez
Hi Maria, We followed the steps laid out by Winkler here: http://brainder.org/2011/07/05/freesurfer-brains-in-arbitrary-colours/ It's actually quite easy, especially if you are are using parcellations as ROIs (which looks like what the authors did) and not vertex generated ROIs. You would have t

Re: [Freesurfer] creating figures using f-score color scale

2013-02-25 Thread Douglas N Greve
Hi Maria, I don't know exactly how they generated it. It might not even have been using the FS tools. If I were to do it in FS, I would create a segmentation by thresholding the continuous map into the ranges of F values I wanted. I would then create an annotation (mris_seg2annot) where I can c